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Software for remote desktop with phone confirmation to use on untrusted machines
(discuss.tchncs.de)
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Honestly, it sounds like you want ssh.
No, because with remote desktop (GUI or terminal) I would clearly see if something other than my instructions is being done. I would see someone else typing or moving stuff around. With SSH malware on the client device can open second session/tty and do things there or simply write a command very fast and click enter before I can react.
If you're genuinely worried about this, you shouldn't be using untrusted machines for remote access.