Have you tried another OS on the same hardware to rule out hardware issues?
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I don't get any audio drops on my work laptop running Windows
Tried different KVM switches
and different ports
with all of the same devices connected but my speakers connected directly to my computer then I get no drops
So the answer is no, you didn't try another OS on the same hardware. Likely could be hardware issue.
Sometimes the different USB ports are backed by different manufacturers. Pretty much all of my USB outputs are a bit unreliable. Apparently a hardware issue. There are two that use a different chipset. Those are the only reliable ones.
So maybe check the various USB ports to see if there's a difference.
I've tried various ports on the motherboard and when directly connected to the same ports that the KVM switch was then there was no issue. I've been wanting to replace my kinda crappy board anyways so maybe the new one will fix it whenever I get around to it. I think I'm going to try to just use 3.5mm cables instead of USB and hope it works fine over the KVM switch. Just ordered a few.
Are either KVM powered by an AC adapter or are they riding off the 5v rail of your PC?
I had a very similar problem and found that the 5v on my PSU was going bad, and as devices powered down/up the KVM would vanish for a second and reconnect.
The first one was powered by 5v off a dedicated usb charger. The new one uses an A/C adapter