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The anti-minimalist backlash is the bigger story behind Oxygen’s revival
(filipfila.wordpress.com)
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Community icon by Alpár-Etele Méder, licensed under CC BY 3.0
True, there are exceptions (that's why I keep saying most), and I think the pattern is more common on web than on desktop. (Though I think Gnome also compensates a bit with their boxed lists as an additional affordance.)
Note that I am 100% on your side in saying that there are annoying toggle boxes that are unclear. In your image, I can only tell that the second is probably on because the right-hand side is usually used for the on state in LTR locales. But they can be better, e.g. with an on/off label integrated. Ironically, GNOME has a toggle to enable this:
So (unsurprisingly) I modified the image to make my point. I don't know whether you will find it convincing with this revealed: I flipped the image because I too understand now (I did not when these switches were first introduced) that right = on. And I also desaturated the image to mimic colourblindness (achromatopsia). (Indeed, when they were first introduced I remember them being two shades of grey...)
No, I was already convinced that relying on colour alone is insufficient. I still think they can be useful helpful if they don't rely on colour alone.