Selfhosted
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I'm in the market for a similar solution. Is the BeagleBone being powered via USB? If so, it might be trying to pull more current than the USB stack will allow at that point. Can you debug the board while it's in the non-working state? Also, does it present as a single HID device?
Yes the beaglebone black is currently powered by USB. Unfortunately I am not able to debug the board while it's not working due to my lack of skill... I don't know how to do... Maybe I can read dmesg on the bbb for a message stating this nonworking state while it asks for passphrase on the PC for a first step... Yes once it's booted, freebsd see it as a single hid device, just a hid device